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[ Source: bedtools  ]

Package: bedtools (2.30.0+dfsg-2 and others)

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suite of utilities for comparing genomic features

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distributed in the filo package.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Suite, Purpose: use::analysing, use::comparing, Data Conversion, use::filtering, works-with::biological-sequence

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Download bedtools

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 2.30.0+dfsg-2 654.2 kB2,548.0 kB [list of files]
amd64 2.30.0+dfsg-2 647.7 kB2,060.0 kB [list of files]
arm64 2.30.0+dfsg-2 565.5 kB1,872.0 kB [list of files]
armel 2.30.0+dfsg-2 535.5 kB1,759.0 kB [list of files]
armhf 2.30.0+dfsg-2 558.9 kB1,275.0 kB [list of files]
hppa (unofficial port) 2.30.0+dfsg-2 638.3 kB2,031.0 kB [list of files]
i386 2.30.0+dfsg-2 707.9 kB2,279.0 kB [list of files]
ia64 (unofficial port) 2.30.0+dfsg-2 816.5 kB4,408.0 kB [list of files]
m68k (unofficial port) 2.30.0+dfsg-2 622.1 kB2,047.0 kB [list of files]
mips64el 2.30.0+dfsg-2 584.8 kB2,591.0 kB [list of files]
mipsel 2.30.0+dfsg-2 603.8 kB2,463.0 kB [list of files]
ppc64 (unofficial port) 2.30.0+dfsg-2 659.2 kB2,776.0 kB [list of files]
ppc64el 2.30.0+dfsg-2 664.3 kB2,520.0 kB [list of files]
riscv64 (unofficial port) 2.30.0+dfsg-2 603.9 kB1,530.0 kB [list of files]
s390x 2.30.0+dfsg-2 566.3 kB2,100.0 kB [list of files]
sh4 (unofficial port) 2.30.0+dfsg-2 748.8 kB1,876.0 kB [list of files]
sparc64 (unofficial port) 2.26.0+dfsg-5 460.9 kB1,898.0 kB [list of files]
x32 (unofficial port) 2.30.0+dfsg-2 642.1 kB1,927.0 kB [list of files]