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[ Source: anfo  ]

Package: anfo (0.98-7)

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Short Read Aligner/Mapper from MPG

Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead).

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Download anfo

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 115.7 kB468.0 kB [list of files]
amd64 115.6 kB450.0 kB [list of files]
arm64 107.7 kB410.0 kB [list of files]
armel 100.8 kB352.0 kB [list of files]
armhf 104.5 kB308.0 kB [list of files]
hppa (unofficial port) 118.6 kB409.0 kB [list of files]
i386 122.0 kB428.0 kB [list of files]
kfreebsd-amd64 113.4 kB414.0 kB [list of files]
kfreebsd-i386 120.7 kB404.0 kB [list of files]
m68k (unofficial port) 116.3 kB403.0 kB [list of files]
mips 110.5 kB429.0 kB [list of files]
mips64el 109.8 kB457.0 kB [list of files]
mipsel 111.9 kB429.0 kB [list of files]
powerpcspe (unofficial port) 112.0 kB612.0 kB [list of files]
ppc64 (unofficial port) 115.3 kB618.0 kB [list of files]
ppc64el 116.5 kB618.0 kB [list of files]
s390x 106.0 kB426.0 kB [list of files]
sh4 (unofficial port) 132.7 kB400.0 kB [list of files]
sparc64 (unofficial port) 103.1 kB441.0 kB [list of files]
x32 (unofficial port) 116.8 kB404.0 kB [list of files]