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[ Source: anfo  ]

Package: anfo (0.98-6)

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Short Read Aligner/Mapper from MPG

Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes more after BLAST/BLAT. It's most useful for the alignment of sequencing reads where the DNA sequence is somehow modified (think ancient DNA or bisulphite treatment) and/or there is more divergence between sample and reference than what fast mappers will handle gracefully (say the reference genome is missing and a related species is used instead).

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Download anfo

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 116.8 kB468.0 kB [list of files]
amd64 116.4 kB418.0 kB [list of files]
arm64 110.7 kB406.0 kB [list of files]
armel 102.3 kB360.0 kB [list of files]
armhf 106.0 kB312.0 kB [list of files]
hppa (unofficial port) 117.1 kB405.0 kB [list of files]
i386 121.4 kB408.0 kB [list of files]
kfreebsd-amd64 113.4 kB402.0 kB [list of files]
kfreebsd-i386 119.3 kB404.0 kB [list of files]
m68k (unofficial port) 111.2 kB403.0 kB [list of files]
mips 111.3 kB429.0 kB [list of files]
mips64el 111.7 kB461.0 kB [list of files]
mipsel 113.6 kB433.0 kB [list of files]
powerpcspe (unofficial port) 112.7 kB612.0 kB [list of files]
ppc64 (unofficial port) 116.0 kB618.0 kB [list of files]
ppc64el 117.7 kB618.0 kB [list of files]
s390x 109.7 kB446.0 kB [list of files]
sh4 (unofficial port) 134.4 kB404.0 kB [list of files]
sparc64 (unofficial port) 102.5 kB432.0 kB [list of files]
x32 (unofficial port) 118.8 kB384.0 kB [list of files]