Package: libjellyfish-perl (2.3.1-3 and others)
Links for libjellyfish-perl
Debian Resources:
Download Source Package jellyfish:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Shaun Jackman (QA Page)
- Andreas Tille (QA Page)
- Michael R. Crusoe (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [www.genome.umd.edu]
Similar packages:
count k-mers in DNA sequences (Perl bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Perl bindings of jellyfish.
Other Packages Related to libjellyfish-perl
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: perl (>= 5.38.2-3.2+b2)
- Larry Wall's Practical Extraction and Report Language
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- dep: perlapi-5.38.2
- virtual package provided by perl-base
Download libjellyfish-perl
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 2.3.1-3+b3 | 55.0 kB | 177.0 kB | [list of files] |