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[ Source: allelecount  ]

Package: allelecount (4.2.1-1)

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NGS copy number algorithms

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings).

The alleleCount package primarily exists to prevent code duplication between some other projects, specifically AscatNGS and Battenberg.

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 28.0 kB94.0 kB [list of files]
amd64 27.9 kB90.0 kB [list of files]
arm64 27.1 kB86.0 kB [list of files]
armel 27.5 kB85.0 kB [list of files]
armhf 26.7 kB77.0 kB [list of files]
hppa (unofficial port) 27.6 kB86.0 kB [list of files]
i386 28.5 kB89.0 kB [list of files]
m68k (unofficial port) 26.6 kB85.0 kB [list of files]
mips64el 26.7 kB92.0 kB [list of files]
mipsel 26.6 kB87.0 kB [list of files]
ppc64 (unofficial port) 29.1 kB118.0 kB [list of files]
ppc64el 29.6 kB118.0 kB [list of files]
riscv64 (unofficial port) 26.5 kB82.0 kB [list of files]
s390x 27.0 kB90.0 kB [list of files]
sh4 (unofficial port) 28.4 kB81.0 kB [list of files]
sparc64 (unofficial port) 26.4 kB88.0 kB [list of files]
x32 (unofficial port) 28.0 kB89.0 kB [list of files]