Пакет: fastahack (0.0+git20160702.bbc645f+dfsg-6)

[ Источник: libfastahack  ]

utility for indexing and sequence extraction from FASTA files

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

Другие пакеты, относящиеся к fastahack

• dep: libc6 (>= 2.14) [amd64]

  библиотека GNU C: динамически подключаемые библиотеки
  также виртуальный пакет, предоставляемый libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libdisorder0 (>= 0.0.2)

  library for entropy measurement of byte streams

• dep: libfastahack0 [armhf, i386]

  library for indexing and sequence extraction from FASTA files (lib)

  dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64]

• dep: libgcc1 (>= 1:3.0) [не armhf]

  вспомогательная библиотека GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5.2)

  стандартная библиотека GNU C++ версии 3

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Архитектура	Размер пакета	В установленном виде	Файлы
amd64	10,8 Кб	40,0 Кб	[список файлов]
arm64	10,3 Кб	36,0 Кб	[список файлов]
armhf	9,8 Кб	31,0 Кб	[список файлов]
i386	11,2 Кб	39,0 Кб	[список файлов]