Пакет: bwa (0.7.17-3)

[ Источник: bwa  ]

Burrows-Wheeler Aligner

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

Теги: Биология: Протеины, Область: Биология, field::biology:bioinformatics, implemented-in::c, Пользовательский интерфейс: Командная строка, interface::text-mode, role::program, Цель: Анализ, Сравнение

Другие пакеты, относящиеся к bwa

• dep: libc6 (>= 2.15)

  библиотека GNU C: динамически подключаемые библиотеки
  также виртуальный пакет, предоставляемый libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  библиотека сжатия

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

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