Пакет: murasaki-mpi (1.68.6-8 и другие)

[ Источник: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Другие пакеты, относящиеся к murasaki-mpi

• dep: libboost-filesystem1.67.0

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.67.0

  библиотека Boost.Iostreams

• dep: libboost-regex1.67.0 (>= 1.67.0-10)

  regular expression library for C++

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libc6 (>= 2.14) [amd64]

  библиотека GNU C: динамически подключаемые библиотеки
  также виртуальный пакет, предоставляемый libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.3.6-6~) [i386]

  dep: libc6 (>= 2.4) [armhf]

• dep: libcrypto++6

  General purpose cryptographic library - shared library

• dep: libgcc1 (>= 1:3.0) [amd64, arm64]

  вспомогательная библиотека GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.2) [i386]

• dep: libopenmpi3

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 5.2)

  стандартная библиотека GNU C++ версии 3

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

Загрузка murasaki-mpi

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Архитектура	Версия	Размер пакета	В установленном виде	Файлы
amd64	1.68.6-8+b1	614,8 Кб	4 026,0 Кб	[список файлов]
arm64	1.68.6-8+b1	548,8 Кб	3 862,0 Кб	[список файлов]
armhf	1.68.6-8+b1	417,4 Кб	2 024,0 Кб	[список файлов]
i386	1.68.6-8+b1	625,1 Кб	3 900,0 Кб	[список файлов]