Пакет: pigx-rnaseq (0.0.10+ds-2)

[ Источник: pigx-rnaseq  ]

pipeline for checkpointed and distributed RNA-seq analyses

This package provides a automated workflow for the automated analysis of RNA-seq experiments. A series of well-accecpted tools are connected in Python scripts and controlled via snakemake. This supports the parallel execution of these workflows and provides checkpointing, such that interrupted workflows can take up their work again.

Другие пакеты, относящиеся к pigx-rnaseq

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• dep: libjs-jquery-tablesorter

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• dep: multiqc

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• dep: pandoc-citeproc

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• dep: python3

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• dep: python3-deeptools

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• dep: python3-htseq

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• dep: r-bioc-deseq2

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• dep: r-bioc-rtracklayer

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• dep: r-bioc-summarizedexperiment

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• dep: r-bioc-tximport

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• dep: r-cran-corrplot

  Visualization of a Correlation Matrix

• dep: r-cran-crosstalk

  GNU R inter-widget interactivity for HTML widgets

• dep: r-cran-data.table

  GNU R extension of Data.frame

• dep: r-cran-dt (>= 0.15+dfsg-2)

  GNU R wrapper of the JavaScript library 'DataTables'

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-gprofiler

  Interface to the 'g:Profiler' Toolkit

• dep: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• dep: r-cran-plotly

  create interactive web graphics via 'plotly.js' in GNU R

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-rjson

  GNU R package for converting between R and JSON objects

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• dep: r-cran-scales

  Scale functions for visualization

• dep: rna-star

  ultrafast universal RNA-seq aligner

• dep: salmon

  wicked-fast transcript quantification from RNA-seq data

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: snakemake

  pythonic workflow management system

• dep: trim-galore

  automate quality and adapter trimming for DNA sequencing

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Архитектура	Размер пакета	В установленном виде	Файлы
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