Pacote: vcfanno (0.3.5+ds-2 e outros)

[ Fonte: vcfanno  ]

annotate a VCF with other VCFs/BEDs/tabixed files

Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.

  * For VCF, values are pulled by name from the INFO field with special
    cases of ID and FILTER to pull from those VCF columns.
  * For BED, values are pulled from (1-based) column number.
  * For BAM, depth (count), "mapq" and "seq" are currently supported.

Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.

Outros pacotes relacionados a vcfanno

• dep: libc6 (>= 2.34)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

Download de vcfanno

Baixe para todas as arquiteturas disponíveis

Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	0.3.5+ds-2+b9	2,622.1 kB	8,044.0 kB	[lista de arquivos]
arm64	0.3.5+ds-2+b9	2,234.5 kB	7,560.0 kB	[lista de arquivos]
armel	0.3.5+ds-2+b9	2,313.6 kB	7,827.0 kB	[lista de arquivos]
armhf	0.3.5+ds-2+b9	2,306.5 kB	7,827.0 kB	[lista de arquivos]
i386	0.3.5+ds-2+b9	2,498.8 kB	7,784.0 kB	[lista de arquivos]
ppc64el	0.3.5+ds-2+b9	2,228.5 kB	7,880.0 kB	[lista de arquivos]
riscv64	0.3.5+ds-2+b9	2,324.1 kB	7,624.0 kB	[lista de arquivos]
s390x	0.3.5+ds-2+b9	2,385.6 kB	8,520.0 kB	[lista de arquivos]