Pacote: libjellyfish-2.0-dev (2.3.1-4 e outros)

[ Fonte: jellyfish  ]

count k-mers in DNA sequences (development files of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the development files (static library and header files)

Etiquetas: Desenvolvimento de software: Bibliotecas, Função: Biblioteca de desenvolvimento

Outros pacotes relacionados a libjellyfish-2.0-dev

• dep: libjellyfish-2.0-2 (= 2.3.1-4+b1)

  count k-mers in DNA sequences (dynamic library of jellyfish)

Download de libjellyfish-2.0-dev

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Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	2.3.1-4+b1	135.2 kB	691.0 kB	[lista de arquivos]
arm64	2.3.1-4+b1	132.6 kB	687.0 kB	[lista de arquivos]
ppc64el	2.3.1-4+b1	140.6 kB	718.0 kB	[lista de arquivos]
riscv64	2.3.1-4+b1	268.7 kB	2,294.0 kB	[lista de arquivos]