Package: qcat (1.1.0-6)

[ Source: qcat  ]

demultiplexing Oxford Nanopore reads from FASTQ files

Qcat is a command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files. It accepts basecalled FASTQ files and splits the reads into separate FASTQ files based on their barcode. Qcat makes the demultiplexing algorithms used in albacore/guppy and EPI2ME available to be used locally with FASTQ files. Currently qcat implements the EPI2ME algorithm.

Other Packages Related to qcat

• dep: python3

  linguagem orientada a objetos de alto nível e interativa (versão python3 padrão)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-parasail

  Python3 bindings for the parasail C library

• dep: python3-six

  biblioteca de compatibilidade entre Python 2 e 3

• dep: python3-yaml

  YAML parser and emitter for Python3

• sug: qcat-examples

  demultiplexing Oxford Nanopore reads from FASTQ files (examples)

Download qcat

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	30.5 kB	269.0 kB	[list of files]