Package: murasaki-mpi (1.68.6-13 and others)

[ Source: murasaki  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

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Download murasaki-mpi

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.68.6-13+b5	694.7 kB	5,701.0 kB	[list of files]
amd64	1.68.6-13+b5	725.1 kB	5,095.0 kB	[list of files]
arm64	1.68.6-13+b5	630.7 kB	5,159.0 kB	[list of files]
armel	1.68.6-13+b5	481.5 kB	3,423.0 kB	[list of files]
armhf	1.68.6-13+b5	495.5 kB	2,415.0 kB	[list of files]
hppa (unofficial port)	1.68.6-13+b5	698.5 kB	4,822.0 kB	[list of files]
i386	1.68.6-13+b5	737.6 kB	4,803.0 kB	[list of files]
ia64 (unofficial port)	1.68.6-13+b5	766.7 kB	9,658.0 kB	[list of files]
m68k (unofficial port)	1.68.6-13+b5	590.5 kB	4,246.0 kB	[list of files]
mips64el	1.68.6-13+b5	688.8 kB	6,877.0 kB	[list of files]
ppc64 (unofficial port)	1.68.6-13+b5	715.8 kB	7,143.0 kB	[list of files]
ppc64el	1.68.6-13+b4	719.3 kB	6,503.0 kB	[list of files]
riscv64	1.68.6-13+b3	676.6 kB	3,970.0 kB	[list of files]
s390x	1.68.6-13+b4	707.7 kB	5,742.0 kB	[list of files]
sh4 (unofficial port)	1.68.6-13+b4	614.4 kB	4,250.0 kB	[list of files]
sparc64 (unofficial port)	1.68.6-11	517.7 kB	3,959.0 kB	[list of files]
x32 (unofficial port)	1.68.6-13+b5	583.0 kB	3,388.0 kB	[list of files]