Package: ivar (1.4.2+dfsg-3 and others)

[ Source: ivar  ]

functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

Other Packages Related to ivar

• dep: libc6 (>= 2.34) [not sh4]

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, x32]

  Biblioteca de suporte GCC

  dep: libgcc-s1 (>= 3.4) [riscv64, sh4, sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  Biblioteca de suporte GCC

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  Biblioteca de suporte GCC

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  Biblioteca C++ padrão da GNU v3

• dep: zlib1g (>= 1:1.1.4) [sparc64]

  biblioteca de compressão - runtime (tempo de execução)

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Download ivar

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.4.2+dfsg-3+b1	222.5 kB	1,523.0 kB	[list of files]
arm64	1.4.2+dfsg-3+b1	202.9 kB	1,487.0 kB	[list of files]
hppa (unofficial port)	1.4.2+dfsg-3+b1	212.5 kB	1,480.0 kB	[list of files]
i386	1.4.2+dfsg-3+b1	233.1 kB	1,537.0 kB	[list of files]
m68k (unofficial port)	1.4.2+dfsg-3+b1	197.4 kB	1,473.0 kB	[list of files]
mips64el	1.4.2+dfsg-3+b1	211.6 kB	1,632.0 kB	[list of files]
riscv64	1.4.2+dfsg-3+b2	214.9 kB	1,419.0 kB	[list of files]
sh4 (unofficial port)	1.4.2+dfsg-3+b1	223.7 kB	1,458.0 kB	[list of files]
sparc64 (unofficial port)	1.4.2+dfsg-3+b1	192.9 kB	2,195.0 kB	[list of files]
x32 (unofficial port)	1.4.2+dfsg-3+b1	222.6 kB	1,494.0 kB	[list of files]