Package: examl (3.0.22-5 and others)
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Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.
ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.
ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.
It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.
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Download examl
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 3.0.22-5 | 834.3 kB | 1,919.0 kB | [list of files] |
| amd64 | 3.0.22-5 | 931.6 kB | 5,969.0 kB | [list of files] |
| arm64 | 3.0.22-5 | 780.5 kB | 1,663.0 kB | [list of files] |
| armel | 3.0.22-5 | 796.9 kB | 1,872.0 kB | [list of files] |
| armhf | 3.0.22-5 | 785.1 kB | 1,520.0 kB | [list of files] |
| hppa (unofficial port) | 3.0.22-5 | 813.5 kB | 1,750.0 kB | [list of files] |
| i386 | 3.0.22-5 | 1,078.8 kB | 7,035.0 kB | [list of files] |
| ia64 (unofficial port) | 3.0.22-5 | 955.5 kB | 2,818.0 kB | [list of files] |
| m68k (unofficial port) | 3.0.22-5 | 763.5 kB | 1,780.0 kB | [list of files] |
| mips64el | 3.0.22-5 | 816.6 kB | 1,811.0 kB | [list of files] |
| ppc64 (unofficial port) | 3.0.22-5 | 836.8 kB | 1,919.0 kB | [list of files] |
| ppc64el | 3.0.22-5 | 845.9 kB | 1,919.0 kB | [list of files] |
| riscv64 | 3.0.22-5 | 840.2 kB | 1,591.0 kB | [list of files] |
| s390x | 3.0.22-5 | 818.0 kB | 1,995.0 kB | [list of files] |
| sh4 (unofficial port) | 3.0.22-5 | 889.8 kB | 1,852.0 kB | [list of files] |
| sparc64 (unofficial port) | 3.0.22-5 | 826.9 kB | 3,716.0 kB | [list of files] |
| x32 (unofficial port) | 3.0.22-4 | 782.5 kB | 1,744.0 kB | [list of files] |