Package: cd-hit (4.8.1-4 and others)

Links for cd-hit

Debian Resources:

Download Source Package cd-hit:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Tim Booth (QA Page)
Andreas Tille (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [weizhongli-lab.org]

Similar packages:

suite of programs designed to quickly group sequences

cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, use::comparing, Works with: Biological Sequence

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Download cd-hit

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	4.8.1-4	505.8 kB	1,531.0 kB	[list of files]
amd64	4.8.1-4	510.3 kB	1,411.0 kB	[list of files]
arm64	4.8.1-4	493.8 kB	1,309.0 kB	[list of files]
armel	4.8.1-4	491.0 kB	1,319.0 kB	[list of files]
armhf	4.8.1-4	487.6 kB	1,111.0 kB	[list of files]
hppa (unofficial port)	4.8.1-4	506.3 kB	1,398.0 kB	[list of files]
i386	4.8.1-4	511.4 kB	1,477.0 kB	[list of files]
ia64 (unofficial port)	4.8.1-4	525.4 kB	2,178.0 kB	[list of files]
m68k (unofficial port)	4.8.1-4	506.1 kB	1,423.0 kB	[list of files]
mips64el	4.8.1-4	510.9 kB	1,588.0 kB	[list of files]
ppc64 (unofficial port)	4.8.1-4	509.0 kB	1,813.0 kB	[list of files]
ppc64el	4.8.1-4	508.7 kB	1,813.0 kB	[list of files]
riscv64	4.8.1-4+b1	505.5 kB	1,236.0 kB	[list of files]
s390x	4.8.1-4	496.6 kB	1,429.0 kB	[list of files]
sh4 (unofficial port)	4.8.1-4	510.8 kB	1,373.0 kB	[list of files]
sparc64 (unofficial port)	4.8.1-4	489.5 kB	1,399.0 kB	[list of files]
x32 (unofficial port)	4.8.1-4	506.8 kB	1,381.0 kB	[list of files]