Package: biobambam2 (2.0.185+ds-2 and others)

[ Source: biobambam2  ]

tools for early stage alignment file processing

This package contains some tools for processing BAM files, including

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

Other Packages Related to biobambam2

• dep: libc6 (>= 2.34) [not alpha, ia64]

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6-udeb

• dep: libc6.1 (>= 2.34) [alpha]

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el]

  Biblioteca de suporte GCC

  dep: libgcc-s1 (>= 3.4) [not arm64, i386, ia64, ppc64el]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  biblioteca de suporte ao GCC OpenMP (GOMP)

• dep: libmaus2-2 (>= 2.0.812+ds) [alpha]

  collection of data structures and algorithms for biobambam

  dep: libmaus2-2 (>= 2.0.813+ds) [not alpha]

• dep: libstdc++6 (>= 11) [alpha, x32]

  Biblioteca C++ padrão da GNU v3

  dep: libstdc++6 (>= 13.1) [not alpha, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4)

  biblioteca de compressão - runtime (tempo de execução)

Download biobambam2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.0.185+ds-1	10,029.6 kB	81,440.0 kB	[list of files]
amd64	2.0.185+ds-2	9,203.8 kB	64,327.0 kB	[list of files]
arm64	2.0.185+ds-2	8,563.8 kB	64,163.0 kB	[list of files]
i386	2.0.185+ds-2	9,933.6 kB	71,707.0 kB	[list of files]
ia64 (unofficial port)	2.0.185+ds-2	10,230.3 kB	117,346.0 kB	[list of files]
mips64el	2.0.185+ds-2	7,602.0 kB	75,740.0 kB	[list of files]
ppc64el	2.0.185+ds-2	8,944.3 kB	76,579.0 kB	[list of files]
riscv64	2.0.185+ds-1+b2	8,817.5 kB	51,672.0 kB	[list of files]
x32 (unofficial port)	2.0.185+ds-1	9,350.0 kB	61,191.0 kB	[list of files]