Package: sga (0.10.15-7 and others)

[ Source: sga  ]

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Other Packages Related to sga

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34)

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  Biblioteca de suporte GCC

• dep: libgomp1 (>= 6)

  biblioteca de suporte ao GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 13.1)

  Biblioteca C++ padrão da GNU v3

• dep: perl

  Linguagem de extração e relatórios prática de Larry Wall

• dep: python3

  linguagem orientada a objetos de alto nível e interativa (versão python3 padrão)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-ruffus

  Python3 computation pipeline library widely used in bioinformatics

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  biblioteca de compressão - runtime (tempo de execução)

• rec: abyss

  montador sequencial, paralelo, de novo para leituras curtas

Download sga

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
riscv64	0.10.15-7+b1	663.5 kB	1,496.0 kB	[list of files]