Pacote: python3-pims (0.7+ds-1)

[ Fonte: pims  ]

Python Image Sequence

Scientific video can be packaged in various ways: familiar video formats like .AVI and .MOV, folders full of numbered images, or "stacks" of TIFF images. Each of these requires a separate Python module. And, once loaded, they have different methods for "accessing individual images, looping through the images in bulk, accessing a specific range, or dealing with multidimensional files". PIMS can do all of these using a consistent interface, handling the differences between different inputs invisibly.

Formats readable by pims include:

 * Directories or zipfiles of still images (most formats, including
   TIFF, JPEG, PNG, BMP), and TIFF stacks
 * Microscope images supported by the Bio-formats project, including
   Leica, Nikon, Olympus, and Zeiss formats. Requires separate
   installation; see below.
 * Movie formats and codecs supported by ffmpeg, including AVI,
   QuickTime MOV, and H.264 (MP4). May require separate installation.
 * CINE files from Vision Research cameras
 * SEQ files from NorPix StreamPix software

PIMS is based on readers by:

 * scikit-image
 * ffmpeg and PyAV (video formats such as AVI, MOV)
 * jpype (interface with Bio-formats)
 * Pillow (improved TIFF support)
 * tifffile (alternative TIFF support)
 * pims_nd2 (improved Nikon .nd2 support)
 * imageio (a multi-purpose reader package that reads and writes
   many formats)
 * moviepy (a Python module that supports video editing)
 * nd2reader (a Pure Python module for reading Nikon NIS Elements
   ND2 images and metadata)

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