Package: libbio-db-hts-perl (3.01-4 and others) [debports]
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Perl interface to the HTS library
HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.
HTSlib implements a generalized BAM (binary SAM) index, with file extension 'csi' (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.
This package provides a Perl interface to the HTS library.
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Download libbio-db-hts-perl
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
hppa (unofficial port) | 3.01-4+b3 | 135.2 kB | 455.0 kB | [list of files] |