Package: sprai (0.9.9.23+dfsg-2)

[ Source: sprai  ]

single-pass sequencing read accuracy improver

Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

Other Packages Related to sprai

• dep: libc6 (>= 2.17) [arm64]

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.7) [not arm64]

• dep: ncbi-blast+ (>= 2.2.27)

  next generation suite of BLAST sequence search tools

• dep: perl

  Linguagem de extração e relatórios prática de Larry Wall

• dep: time

  programa "time" do GNU para medição do uso de recursos da CPU

• sug: make

  utilitário para compilação direta

• sug: pbalign

  map Pacific Biosciences reads to reference DNA sequences

• sug: pbgenomicconsensus

  Pacific Biosciences variant and consensus caller

• sug: pbh5tools

  tools for manipulating Pacific Biosciences HDF5 files

Download sprai

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	1,480.4 kB	1,715.0 kB	[list of files]
arm64	1,477.5 kB	1,699.0 kB	[list of files]
armhf	1,474.3 kB	1,667.0 kB	[list of files]
i386	1,480.1 kB	1,715.0 kB	[list of files]