Package: parsnp (1.2+dfsg-5)

[ Source: parsnp  ]

rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

Other Packages Related to parsnp

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: libc6 (>= 2.27)

  GNU Biblioteca C: Bibliotecas compartilhadas
  also a virtual package provided by libc6-udeb

• dep: libgcc1 (>= 1:3.0) [not armhf]

  Biblioteca de suporte GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libgomp1 (>= 4.9)

  biblioteca de suporte ao GCC OpenMP (GOMP)

• dep: libmuscle1 (>= 3.7+4565)

  multiple alignment library for protein sequences

• dep: libstdc++6 (>= 5.2)

  Biblioteca C++ padrão da GNU v3

• dep: mummer

  alinhamento eficiente de seqüência para genomas completos

• dep: phipack

  PHI test and other tests of recombination

• dep: python

  linguagem interativa de alto nível orientada a objetos (versão Python2)

• dep: python-numpy

  Python numérico adiciona uma funcionalidade de array rápida na linguagem Python

• rec: python-dendropy

  DendroPy Phylogenetic Computing Library (Python 2)

Download parsnp

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	516.2 kB	913.0 kB	[list of files]
arm64	508.8 kB	873.0 kB	[list of files]
armhf	492.4 kB	784.0 kB	[list of files]
i386	518.4 kB	920.0 kB	[list of files]