Package: augustus (3.3.2+dfsg-2)
Links for augustus
Debian Resources:
Download Source Package augustus:
Maintainers:
External Resources:
- Homepage [bioinf.uni-greifswald.de]
Similar packages:
gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
Other Packages Related to augustus
|
|
|
|
-
- dep: augustus-data
- data files for AUGUSTUS
-
- dep: libbamtools2.5.1
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libbz2-1.0
- bib. de alta qualid. de compactação de arqs. bas. em ordenação de blocos - exec
-
- dep: libc6 (>= 2.15) [not arm64]
- GNU Biblioteca C: Bibliotecas compartilhadas
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
-
- dep: libcurl3-nss (>= 7.23.1)
- easy-to-use client-side URL transfer library (NSS flavour)
-
- dep: libgcc1 (>= 1:3.0) [amd64]
- Biblioteca de suporte GCC
- dep: libgcc1 (>= 1:3.5) [armhf]
- dep: libgcc1 (>= 1:4.5) [arm64]
-
- dep: libhts2 (>= 1.0)
- C library for high-throughput sequencing data formats
-
- dep: liblzma5 (>= 5.1.1alpha+20110809)
- biblioteca de compressão para formato XZ
-
- dep: libncurses6 (>= 6)
- bibliotecas compartilhadas para manipulação do terminal
-
- dep: libssl1.1 (>= 1.1.0)
- conjunto de ferramentas "Secure Socket Layer" (SSL) - bibliotecas compartilhadas
-
- dep: libstdc++6 (>= 6)
- Biblioteca C++ padrão da GNU v3
-
- dep: libtinfo6 (>= 6)
- biblioteca de terminfo de baixo-nível compartilhada para manipulação de terminal
-
- dep: zlib1g (>= 1:1.2.3.3)
- biblioteca de compressão - runtime (tempo de execução)
Download augustus
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
amd64 | 1,134.7 kB | 4,787.0 kB | [list of files] |
arm64 | 992.1 kB | 4,349.0 kB | [list of files] |
armhf | 952.2 kB | 3,255.0 kB | [list of files] |