Pacote: nanolyse (1.2.0-1)

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Pagina principal [github.com]

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remove lambda phage reads from a fastq file

NanoLyse is a tool for rapid removal of contaminant DNA, using the Minimap2 aligner through the mappy Python binding. A typical application would be the removal of the lambda phage control DNA fragment supplied by ONT, for which the reference sequence is included in the package. However, this approach may lead to unwanted loss of reads from regions highly homologous to the lambda phage genome.

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dep: python3

linguagem orientada a objetos de alto nível e interativa (versão padrão da python3)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-mappy

Python3 interface minimap2

Download de nanolyse

Baixe para todas as arquiteturas disponíveis
Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	24.5 kB	66.0 kB	[lista de arquivos]
arm64	24.5 kB	66.0 kB	[lista de arquivos]
armhf	24.5 kB	66.0 kB	[lista de arquivos]
i386	24.5 kB	66.0 kB	[lista de arquivos]