Pacote: mapsembler2 (2.2.4+dfsg1-3)

[ Fonte: mapsembler2  ]

bioinformatics targeted assembly software

Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).

It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.

Mapsembler2 may be used for (not limited to):

 - Validate an assembled sequence (input as starter), e.g. from a de
   Bruijn graph assembly where read-coherence was not enforced.
 - Checks if a gene (input as starter) has an homolog in a set of reads
 - Checks if a known enzyme is present in a metagenomic NGS read set.
 - Enrich unmappable reads by extending them, possibly making them mappable
 - Checks what happens at the extremities of a contig
 - Remove contaminants or symbiont reads from a read set

Outros pacotes relacionados a mapsembler2

• dep: bc

  linguagem de calculadora de precisão arbitrária bc do GNU

• dep: libc6 (>= 2.29)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  Biblioteca de suporte GCC

• dep: libgomp1 (>= 4.9)

  biblioteca de suporte ao GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 5.2)

  Biblioteca C++ padrão da GNU v3

• dep: zlib1g (>= 1:1.2.3.4)

  biblioteca de compressão - runtime (tempo de execução)

Download de mapsembler2

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	707.2 kB	1,282.0 kB	[lista de arquivos]
arm64	685.2 kB	1,246.0 kB	[lista de arquivos]