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[ Pakiet źródłowy: wise  ]

Pakiet: wise (2.4.1-10)

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comparison of biopolymers, commonly DNA and protein sequences

Wise2 is a package focused on comparisons of biopolymers, commonly DNA and protein sequences. There are many other packages which do this, probably the best known being BLAST package (from NCBI) and the Fasta package (from Bill Pearson). There are other packages, such as the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused on hidden Markov models (HMMs) of biopolymers.

Wise2's particular forte is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of say gene structure with homology based alignment.

Wise2 also contains other algorithms, such as the venerable Smith-Waterman algorithm, or more modern ones such as Stephen Altschul's generalised gap penalties, or even experimental ones developed in house, such as dba. The development of these algorithms is due to the ease of developing such algorithms in the environment used by Wise2.

Wise2 has also been written with an eye for reuse and maintainability. Although it is a pure C package you can access its functionality directly in Perl. Parts of the package (or the entire package) can be used by other C or C++ programs without namespace clashes as all externally linked variables have the unique identifier Wise2 prepended.

Znaczniki: Dziedzina: Biologia, Bioinformatyka, Zaimplementowane w: implemented-in::c, interface::commandline, Rola: Program, Zakres: Narzędzie, Przeznaczenie: use::comparing, works-with::TODO

Inne pakiety związane z wise

  • wymaga
  • poleca
  • sugeruje
  • enhances

Pobieranie wise

Pobierz dla wszystkich dostępnych architektur
Architektura Rozmiar pakietu Rozmiar po instalacji Pliki
amd64 1 049,6 KiB11 252,0 KiB [lista plików]
armel 837,3 KiB10 177,0 KiB [lista plików]
armhf 866,1 KiB7 439,0 KiB [lista plików]
i386 1 004,9 KiB11 420,0 KiB [lista plików]
ia64 1 488,8 KiB25 087,0 KiB [lista plików]
kfreebsd-amd64 1 052,0 KiB11 212,0 KiB [lista plików]
kfreebsd-i386 1 010,3 KiB11 373,0 KiB [lista plików]
mips 1 005,4 KiB12 228,0 KiB [lista plików]
mipsel 1 029,2 KiB12 211,0 KiB [lista plików]
powerpc 825,2 KiB10 520,0 KiB [lista plików]
s390 863,1 KiB10 865,0 KiB [lista plików]
s390x 1 097,1 KiB13 012,0 KiB [lista plików]
sparc 834,6 KiB10 015,0 KiB [lista plików]