Pakiet: chip-seq (1.5.5-3)

[ Pakiet źródłowy: chip-seq  ]

tools performing common ChIP-Seq data analysis tasks

The ChIP-Seq software provides a set of tools performing common genome- wide ChIP- seq analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. These tools exist as stand-alone C programs and perform the following tasks:

 1. Positional correlation analysis and generation of an aggregation
    plot (AP) (chipcor),
 2. Extraction of specific genome annotation features around reference
    anchor points (chipextract),
 3. Read centering or shifting (chipcenter),
 4. Narrow peak caller using a fixed width peak size (chippeak),
 5. Broad peak caller used for large regions of enrichment (chippart),
 6. Feature selection tool based on a read count threshold (chipscore).

Because the ChIP-Seq tools are primarily optimized for speed, they use their own compact format for ChIP-seq data representation called SGA (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited plain text format.

Inne pakiety związane z chip-seq

• dep: chip-seq-data

  tools performing common ChIP-Seq data analysis tasks (data)

• dep: libc6 (>= 2.14) [amd64]

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [nie amd64, arm64, ppc64el]

• dep: libmath-round-perl

  Perl extension for rounding numbers

Pobieranie chip-seq

Pobierz dla wszystkich dostępnych architektur

Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	98,7 KiB	496,0 KiB	[lista plików]
arm64	97,5 KiB	456,0 KiB	[lista plików]
armel	91,2 KiB	418,0 KiB	[lista plików]
armhf	90,3 KiB	358,0 KiB	[lista plików]
i386	98,1 KiB	510,0 KiB	[lista plików]
mips64el	99,7 KiB	492,0 KiB	[lista plików]
ppc64el	104,5 KiB	1 040,0 KiB	[lista plików]
s390x	93,0 KiB	467,0 KiB	[lista plików]