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[ Source: boxshade  ]

Package: boxshade (3.3.1-4)

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Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tags: Biology: Clustal/ALN, Nucleic Acids, Proteins, Software Development: Prettyprint, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Typesetting, Supports Format: HTML, Hypertext Markup Language, Plain Text, PostScript, TeX and LaTeX

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Download boxshade

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 51.8 kB244.0 kB [list of files]
armel 52.7 kB244.0 kB [list of files]
i386 45.8 kB172.0 kB [list of files]
ia64 66.7 kB336.0 kB [list of files]
kfreebsd-amd64 51.8 kB170.0 kB [list of files]
kfreebsd-i386 45.3 kB158.0 kB [list of files]
mips 52.3 kB280.0 kB [list of files]
mipsel 52.4 kB280.0 kB [list of files]
powerpc 51.1 kB248.0 kB [list of files]
s390 53.0 kB248.0 kB [list of files]
sparc 49.2 kB240.0 kB [list of files]