Pakiet źródłowy: bcbio (1.2.9-4)
[contrib]
Odnośniki dla bcbio
Zasoby systemu Debian:
Opiekunowie:
Zasoby zewnętrzne:
Z tego pakietu źródłowego zbudowano następujące pakiety binarne:
- bcbio
- toolkit for analysing high-throughput sequencing data
- python3-bcbio
- library for analysing high-throughput sequencing data
Inne pakiety związane z bcbio
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python3-pandas
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python3-pysam
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python3-joblib
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atropos
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bcftools
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bedtools
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- adep:
biobambam2
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- adep:
bowtie2
- ultrafast memory-efficient short read aligner
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- adep:
bwa
- Burrows-Wheeler Aligner
-
- adep:
cnvkit
- Copy number variant detection from targeted DNA sequencing
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- adep:
fastqc
- quality control for high throughput sequence data
-
- adep:
freebayes
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-
- adep:
gffread
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- adep:
grabix
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- adep:
gsort
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- adep:
hisat2
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libfreetype6
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lumpy-sv
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mosdepth
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multiqc
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-
- adep:
perl
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- adep:
libpicard-java
- Java library to manipulate SAM and BAM files
-
- adep:
libvcflib-tools
- C++ library for parsing and manipulating VCF files (tools)
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- adep:
picard-tools
- Narzędzia wiersza poleceń do zarządzania plikami SAM i BAM
-
- adep:
python3-biopython
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- adep:
python3-cyvcf2
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- adep:
python3-geneimpacts
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- adep:
python3-logbook
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- adep:
pythonpy
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- adep:
rapmap
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- adep:
r-base-core
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- adep:
r-bioc-degreport
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- adep:
r-bioc-purecn
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- adep:
r-bioc-summarizedexperiment
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- adep:
r-cran-tidyverse
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- adep:
r-bioc-titancna
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- adep:
r-bioc-tximport
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- adep:
r-other-wasabi
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-
- adep:
salmon
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-
- adep:
samblaster
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-
- adep:
samtools
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-
- adep:
seqan-apps
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-
- adep:
seqtk
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- adep:
snpeff
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- adep:
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- adep:
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-
- adep:
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- adep:
umis
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-
- adep:
vcfanno
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-
- adep:
vt
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- adep:
wham-align
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- adep:
xonsh
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- adep:
libhts-dev
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python3-sphinx
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