Pakiet: r-bioc-progeny (1.24.0+ds-1)

[ Pakiet źródłowy: r-bioc-progeny  ]

activity inference from gene expression

This package provides a function to infer pathway activity from gene expression using PROGENy. It contains the linear model which is described in the publication "Perturbation-response genes reveal signaling footprints in cancer gene expression".

Inne pakiety związane z r-bioc-progeny

• dep: r-api-4.0

  pakiet wirtualny udostępniany przez r-base-core

• dep: r-api-bioc-3.18

  pakiet wirtualny udostępniany przez r-bioc-biocgenerics

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-decoupler

  infer biological activities from omics data

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-ggplot2

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• dep: r-cran-ggrepel

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• dep: r-cran-gridextra

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• dep: r-cran-reshape2

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• dep: r-cran-tidyr

  GNU R package to easily tidy data

• sug: r-bioc-biocfilecache

  GNU R management of files across sessions

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-deseq2

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• sug: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• sug: r-cran-broom

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• sug: r-cran-knitr

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• sug: r-cran-pheatmap

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• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-readxl

  GNU R package to read Excel files

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-seurat

  Tools for Single Cell Genomics

• sug: r-cran-testthat (>= 2.1.0)

  GNU R testsuite

• sug: r-cran-tibble

  GNU R Simple Data Frames

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