Pakiet: jellyfish1 (1.1.11-4)

[ Pakiet źródłowy: jellyfish1  ]

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This is the latest version of the 1.x series of jellyfish which is used by some other applications that are not compatible with version 2.x which is provided inside the jellyfish package.

Inne pakiety związane z jellyfish1

• dep: libc6 (>= 2.14) [amd64]

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [amd64, arm64]

  Biblioteka wspomagająca GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.2) [i386]

• dep: libstdc++6 (>= 5.2)

  Standardowa biblioteka GNU C++, wersja 3

• enh: kraken

  assigning taxonomic labels to short DNA sequences

Pobieranie jellyfish1

Pobierz dla wszystkich dostępnych architektur

Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	144,6 KiB	684,0 KiB	[lista plików]
arm64	135,7 KiB	635,0 KiB	[lista plików]
armhf	135,6 KiB	551,0 KiB	[lista plików]
i386	161,6 KiB	711,0 KiB	[lista plików]