Pakiet: wise (2.4.1-23)

[ Pakiet źródłowy: wise  ]

comparison of biopolymers, like DNA and protein sequences

Wise2 is a package focused on comparisons of biopolymers, commonly DNA and protein sequences. There are many other packages which do this, probably the best known being BLAST package (from NCBI) and the Fasta package (from Bill Pearson). There are other packages, such as the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused on hidden Markov models (HMMs) of biopolymers.

Wise2's particular forte is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of say gene structure with homology based alignment.

Wise2 also contains other algorithms, such as the venerable Smith-Waterman algorithm, or more modern ones such as Stephen Altschul's generalised gap penalties, or even experimental ones developed in house, such as dba. The development of these algorithms is due to the ease of developing such algorithms in the environment used by Wise2.

Wise2 has also been written with an eye for reuse and maintainability. Although it is a pure C package you can access its functionality directly in Perl. Parts of the package (or the entire package) can be used by other C or C++ programs without namespace clashes as all externally linked variables have the unique identifier Wise2 prepended.

Znaczniki: Dziedzina: Biologia, Bioinformatyka, Zaimplementowane w: implemented-in::c, interface::commandline, Rola: Program, Zakres: Narzędzie, Przeznaczenie: use::comparing, works-with::TODO

Inne pakiety związane z wise

• dep: libc6 (>= 2.29)

  Biblioteka GNU C: biblioteki współdzielone
  również pakiet wirtualny udostępniany przez libc6-udeb

• dep: libglib2.0-0 (>= 2.12.0)

  Glib, biblioteka funkcji języka C

• dep: wise-data (= 2.4.1-23)

  data files for the wise package

• sug: wise-doc (= 2.4.1-23)

  documentation for the wise package

Pobieranie wise

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amd64	970,6 KiB	9 726,0 KiB	[lista plików]
arm64	946,0 KiB	9 258,0 KiB	[lista plików]
armel	735,3 KiB	8 526,0 KiB	[lista plików]
armhf	773,2 KiB	6 074,0 KiB	[lista plików]
i386	1 052,3 KiB	10 826,0 KiB	[lista plików]
mips64el	1 068,3 KiB	11 915,0 KiB	[lista plików]
mipsel	1 059,1 KiB	11 315,0 KiB	[lista plików]
ppc64el	1 073,4 KiB	12 878,0 KiB	[lista plików]
s390x	955,7 KiB	11 022,0 KiB	[lista plików]