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[ Source: embassy-domsearch  ]

Package: embassy-domsearch (1:0.1.0+20110714-1)

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Extra EMBOSS commands to search for protein domains

The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt).

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: Analysing

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Architecture Package Size Installed Size Files
amd64 127.3 kB628.0 kB [list of files]
armel 128.3 kB612.0 kB [list of files]
armhf 125.8 kB604.0 kB [list of files]
i386 123.5 kB611.0 kB [list of files]
ia64 131.3 kB655.0 kB [list of files]
kfreebsd-amd64 126.9 kB561.0 kB [list of files]
kfreebsd-i386 125.6 kB545.0 kB [list of files]
mips 122.2 kB613.0 kB [list of files]
mipsel 123.1 kB613.0 kB [list of files]
powerpc 124.6 kB612.0 kB [list of files]
s390 128.7 kB619.0 kB [list of files]
s390x 129.4 kB632.0 kB [list of files]
sparc 122.1 kB618.0 kB [list of files]