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Pakket: ampliconnoise (1.25-1)

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Programs for the removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Removing Noise From Pyrosequenced Amplicons Christopher Quince, Anders Lanzen, Russell J Davenport and Peter J Turnbaugh BMC Bioinformatics 2011, 12:38doi:10.1186/1471-2105-12-38

Tags: Role: Program

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 411,1 kB1.156,0 kB [overzicht]
armel 398,0 kB1.148,0 kB [overzicht]
armhf 360,4 kB890,0 kB [overzicht]
i386 387,7 kB1.140,0 kB [overzicht]
kfreebsd-amd64 396,5 kB1.072,0 kB [overzicht]
kfreebsd-i386 370,9 kB1.018,0 kB [overzicht]
powerpc 388,3 kB1.132,0 kB [overzicht]
sparc 373,0 kB1.092,0 kB [overzicht]