Pakket: stacks (2.66+dfsg-1 en anderen)

[ Bron: stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Andere aan stacks gerelateerde pakketten

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, ppc64el]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3 (>= 1.17) [niet armel, armhf]

  C library for high-throughput sequencing data formats

• dep: libhts3t64 (>= 1.17) [armel, armhf]

  Pakket niet beschikbaar

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  compressiebibliotheek - programma's

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  Ook een virtueel pakket geboden door: r-cran-littler

• sug: gdb

  GNU Debugger
  Ook een virtueel pakket geboden door: gdb-minimal

stacks downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.66+dfsg-1	1.154,2 kB	5.806,0 kB	[overzicht]
arm64	2.66+dfsg-1	1.003,5 kB	5.724,0 kB	[overzicht]
armel	2.66+dfsg-1+b1	979,6 kB	5.148,0 kB	[overzicht]
armhf	2.66+dfsg-1+b1	1.000,0 kB	3.632,0 kB	[overzicht]
i386	2.66+dfsg-1	1.233,0 kB	6.099,0 kB	[overzicht]
mips64el	2.66+dfsg-1	1.062,4 kB	7.442,0 kB	[overzicht]
ppc64el	2.66+dfsg-1	1.124,5 kB	7.004,0 kB	[overzicht]
s390x	2.66+dfsg-1	1.105,0 kB	6.048,0 kB	[overzicht]