Pakket: r-bioc-megadepth (1.12.0+ds-2)

[ Bron: r-bioc-megadepth  ]

BioCOnductor BigWig and BAM related utilities

This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.

Andere aan r-bioc-megadepth gerelateerde pakketten

• dep: megadepth

  computes coverage from BigWig and BAM sequencing files

• dep: r-api-4.0

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• dep: r-api-bioc-3.18

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• dep: r-bioc-genomicranges

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• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-rtracklayer

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• sug: r-cran-covr

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• sug: r-cran-sessioninfo

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• sug: r-cran-testthat

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Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
all	83,0 kB	165,0 kB	[overzicht]