Pakket: murasaki (1.68.6-13 en anderen)

[ Bron: murasaki  ]

homology detection tool across multiple large genomes

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

Andere aan murasaki gerelateerde pakketten

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libc6 (>= 2.34)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

murasaki downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.68.6-13+b5	611,1 kB	4.244,0 kB	[overzicht]
arm64	1.68.6-13+b5	533,9 kB	4.319,0 kB	[overzicht]
armel	1.68.6-13+b5	444,2 kB	3.315,0 kB	[overzicht]
armhf	1.68.6-13+b5	457,2 kB	2.339,0 kB	[overzicht]
i386	1.68.6-13+b5	621,8 kB	4.071,0 kB	[overzicht]
mips64el	1.68.6-13+b5	578,5 kB	5.874,0 kB	[overzicht]
ppc64el	1.68.6-13+b4	599,9 kB	5.536,0 kB	[overzicht]
s390x	1.68.6-13+b4	596,5 kB	4.799,0 kB	[overzicht]