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Pakket: velvet (1.0.02~nozlibcopy-1)

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Nucleic acid sequence assembler for very short reads

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

Tags: Biology: Nucleic Acids, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Purpose: Analysing

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velvet downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 654,5 kB1.312,0 kB [overzicht]
armel 666,7 kB1.316,0 kB [overzicht]
i386 665,2 kB1.316,0 kB [overzicht]
ia64 789,8 kB2.320,0 kB [overzicht]
kfreebsd-amd64 654,9 kB1.250,0 kB [overzicht]
kfreebsd-i386 666,1 kB1.280,0 kB [overzicht]
mips 711,6 kB1.588,0 kB [overzicht]
mipsel 712,0 kB1.588,0 kB [overzicht]
powerpc 689,2 kB1.388,0 kB [overzicht]
s390 693,9 kB1.388,0 kB [overzicht]
sparc 673,0 kB1.356,0 kB [overzicht]