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[ Source: velvet  ]

Package: velvet (1.0.02~nozlibcopy-1)

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Nucleic acid sequence assembler for very short reads

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

Tags: Biology: Nucleic Acids, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Purpose: Analysing

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 654.5 kB1,312.0 kB [list of files]
armel 666.7 kB1,316.0 kB [list of files]
i386 665.2 kB1,316.0 kB [list of files]
ia64 789.8 kB2,320.0 kB [list of files]
kfreebsd-amd64 654.9 kB1,250.0 kB [list of files]
kfreebsd-i386 666.1 kB1,280.0 kB [list of files]
mips 711.6 kB1,588.0 kB [list of files]
mipsel 712.0 kB1,588.0 kB [list of files]
powerpc 689.2 kB1,388.0 kB [list of files]
s390 693.9 kB1,388.0 kB [list of files]
sparc 673.0 kB1,356.0 kB [list of files]