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[ Source: kalign  ]

Package: kalign (2.04-2)

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Global and progressive multiple sequence alignment

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 98.9 kB288.0 kB [list of files]
armel 104.5 kB284.0 kB [list of files]
i386 85.7 kB264.0 kB [list of files]
ia64 152.8 kB532.0 kB [list of files]
kfreebsd-amd64 98.8 kB276.0 kB [list of files]
kfreebsd-i386 85.9 kB228.0 kB [list of files]
mips 91.4 kB308.0 kB [list of files]
mipsel 92.1 kB308.0 kB [list of files]
powerpc 94.3 kB280.0 kB [list of files]
s390 93.7 kB268.0 kB [list of files]
sparc 81.9 kB256.0 kB [list of files]