[ Bron: vcfanno ]
Pakket: vcfanno (0.3.5+ds-2)
Verwijzigingen voor vcfanno
Debian bronnen:
Het bronpakket vcfanno downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Andreas Tille (QA-pagina)
- Nilesh Patra (QA-pagina)
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
Vcfanno is written in go and it supports custom user-scripts written in Lua. It can annotate more than 8000 variants per second with 34 annotations from 9 files on a modest laptop and over 30K variants per second using 12 processes on a server.
Andere aan vcfanno gerelateerde pakketten
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- dep: libc6 (>= 2.34) [niet alpha]
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb
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- dep: libgcc-s1 (>= 3.3.1) [ppc64, x32]
- GCC support bibliotheek
- dep: libgcc-s1 (>= 3.4) [alpha, sparc64]
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- dep: libgo22 [alpha, ppc64, sparc64, x32]
- Runtime library for GNU Go applications
vcfanno downloaden
| Platform | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
|---|---|---|---|
| alpha (unofficial port) | 625,6 kB | 3.140,0 kB | [overzicht] |
| amd64 | 2.249,3 kB | 6.683,0 kB | [overzicht] |
| arm64 | 1.926,1 kB | 6.367,0 kB | [overzicht] |
| armel | 1.923,4 kB | 6.531,0 kB | [overzicht] |
| armhf | 1.915,6 kB | 6.491,0 kB | [overzicht] |
| i386 | 2.071,5 kB | 6.520,0 kB | [overzicht] |
| mips64el | 1.736,8 kB | 7.410,0 kB | [overzicht] |
| ppc64 (unofficial port) | 727,7 kB | 4.594,0 kB | [overzicht] |
| ppc64el | 1.915,0 kB | 6.558,0 kB | [overzicht] |
| riscv64 | 1.945,1 kB | 6.439,0 kB | [overzicht] |
| s390x | 2.058,2 kB | 7.111,0 kB | [overzicht] |
| sparc64 (unofficial port) | 606,9 kB | 4.930,0 kB | [overzicht] |
| x32 (unofficial port) | 647,4 kB | 2.660,0 kB | [overzicht] |