Pakket: umis (1.0.9-1 en anderen)

[ Bron: umis  ]

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process.

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

Andere aan umis gerelateerde pakketten

• dep: libc6 (>= 2.16) [x32]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [hppa]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.36) [sh4]

  dep: libc6 (>= 2.4) [amd64, armel, armhf, i386, m68k, mips64el, ppc64, sparc64]

• dep: libc6.1 (>= 2.1.3) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12) [niet hppa, ppc64, sparc64]

  dep: python3 (<< 3.8) [hppa, ppc64, sparc64]

  dep: python3 (>= 3.11~) [niet hppa, ppc64, sparc64]

  dep: python3 (>= 3.7~) [hppa, ppc64, sparc64]

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-regex

  alternative regular expression module (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-toolz

  List processing tools and functional utilities

• sug: umis-examples

  tools for processing UMI RNA-tag data (examples)

umis downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.0.9-1	26,1 kB	157,0 kB	[overzicht]
amd64	1.0.9-1	25,8 kB	116,0 kB	[overzicht]
arm64	1.0.9-1	25,4 kB	156,0 kB	[overzicht]
armel	1.0.9-1	26,3 kB	111,0 kB	[overzicht]
armhf	1.0.9-1	24,9 kB	103,0 kB	[overzicht]
hppa (unofficial port)	1.0.3-1	24,9 kB	112,0 kB	[overzicht]
i386	1.0.9-1	26,4 kB	115,0 kB	[overzicht]
ia64 (unofficial port)	1.0.9-1	28,3 kB	124,0 kB	[overzicht]
m68k (unofficial port)	1.0.9-1	25,5 kB	115,0 kB	[overzicht]
mips64el	1.0.9-1	25,7 kB	157,0 kB	[overzicht]
ppc64 (unofficial port)	1.0.3-1	24,7 kB	156,0 kB	[overzicht]
ppc64el	1.0.9-1	26,4 kB	156,0 kB	[overzicht]
riscv64	1.0.9-1+b1	30,6 kB	122,0 kB	[overzicht]
sh4 (unofficial port)	1.0.9-1	26,4 kB	155,0 kB	[overzicht]
sparc64 (unofficial port)	1.0.3-1	24,0 kB	118,0 kB	[overzicht]
x32 (unofficial port)	1.0.9-1	25,8 kB	111,0 kB	[overzicht]