Pakket: sibelia (3.0.7+dfsg-3 en anderen)

[ Bron: sibelia  ]

comparative genomics tool

Sibelia (Synteny Block ExpLoration tool) is a comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms.

Sibelia is useful in finding:

 1) shared regions,
 2) regions that present in one group of genomes but not in others,
 3) rearrangements that transform one genome to other genomes.

Andere aan sibelia gerelateerde pakketten

• dep: lagan

  highly parametrizable pairwise global genome sequence aligner

• dep: libc6 (>= 2.11) [hppa]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.30) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

  dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.30) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: libdivsufsort3 (>= 2.0.1)

  fast suffix array construction

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 13.1) [riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [niet riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• sug: sibelia-examples

  comparative genomics tool (example data)

sibelia downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	3.0.7+dfsg-3	306,8 kB	1.318,0 kB	[overzicht]
amd64	3.0.7+dfsg-3	309,7 kB	1.176,0 kB	[overzicht]
arm64	3.0.7+dfsg-3	278,3 kB	1.120,0 kB	[overzicht]
armel	3.0.7+dfsg-3	283,4 kB	1.139,0 kB	[overzicht]
armhf	3.0.7+dfsg-3	289,5 kB	955,0 kB	[overzicht]
hppa (unofficial port)	3.0.7+dfsg-3	293,4 kB	1.075,0 kB	[overzicht]
i386	3.0.7+dfsg-3	312,3 kB	1.151,0 kB	[overzicht]
ia64 (unofficial port)	3.0.7+dfsg-3	356,1 kB	2.562,0 kB	[overzicht]
m68k (unofficial port)	3.0.7+dfsg-3	311,7 kB	1.339,0 kB	[overzicht]
mips64el	3.0.7+dfsg-3	278,1 kB	1.250,0 kB	[overzicht]
ppc64 (unofficial port)	3.0.7+dfsg-3	298,9 kB	1.292,0 kB	[overzicht]
ppc64el	3.0.7+dfsg-3	305,1 kB	1.228,0 kB	[overzicht]
riscv64	3.0.7+dfsg-3+b1	302,4 kB	1.069,0 kB	[overzicht]
s390x	3.0.7+dfsg-3	275,7 kB	1.128,0 kB	[overzicht]
sh4 (unofficial port)	3.0.7+dfsg-3	339,7 kB	1.092,0 kB	[overzicht]
sparc64 (unofficial port)	3.0.7+dfsg-3	269,2 kB	1.128,0 kB	[overzicht]
x32 (unofficial port)	3.0.7+dfsg-3	311,1 kB	1.115,0 kB	[overzicht]