Pakket: sga (0.10.15-7 en anderen)

[ Bron: sga  ]

de novo genome assembler that uses string graphs

The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Andere aan sga gerelateerde pakketten

• dep: libbamtools2.4.0 [hppa, ppc64, sparc64]

  Pakket niet beschikbaar

• dep: libbamtools2.5.1 [sh4]

  Pakket niet beschikbaar

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg) [niet hppa, ppc64, sh4, sparc64]

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.23) [hppa, ppc64, sparc64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.27) [sh4]

  dep: libc6 (>= 2.34) [niet alpha, hppa, ia64, ppc64, sh4, sparc64]

• dep: libc6.1 (>= 2.33) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc1 (>= 1:3.0) [ppc64]

  Pakket niet beschikbaar

  dep: libgcc1 (>= 1:3.4) [sh4, sparc64]

• dep: libgcc4 (>= 4.1.1) [hppa]

  Pakket niet beschikbaar

• dep: libgomp1 (>= 4.9) [hppa, ppc64, sh4, sparc64]

  GCC OpenMP (GOMP) support library

  dep: libgomp1 (>= 6) [niet hppa, ppc64, sh4, sparc64]

• dep: libstdc++6 (>= 11) [niet alpha, hppa, ppc64, riscv64, sh4, sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [alpha, riscv64]

  dep: libstdc++6 (>= 5.2) [hppa, ppc64, sh4, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: perl [niet hppa, ppc64, sh4, sparc64]

  Larry Wall's Practical Extraction and Report Language

• dep: python [hppa, ppc64, sh4, sparc64]

  Pakket niet beschikbaar

• dep: python-pysam [hppa, ppc64, sh4, sparc64]

  Pakket niet beschikbaar

• dep: python-ruffus [hppa, ppc64, sh4, sparc64]

  Pakket niet beschikbaar

• dep: python3 [niet hppa, ppc64, sh4, sparc64]

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pysam [niet hppa, ppc64, sh4, sparc64]

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-ruffus [niet hppa, ppc64, sh4, sparc64]

  Python3 computation pipeline library widely used in bioinformatics

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

• rec: abyss [niet sh4]

  de novo, parallel, sequence assembler for short reads

  rec: abyss (>= 2.0.2-1) [sh4]

• sug: abyss (>= 1.5.2-2)

  de novo, parallel, sequence assembler for short reads

sga downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.10.15-7	755,4 kB	2.753,0 kB	[overzicht]
amd64	0.10.15-7+b1	812,5 kB	2.432,0 kB	[overzicht]
arm64	0.10.15-7+b1	580,5 kB	1.792,0 kB	[overzicht]
armel	0.10.15-7+b1	564,3 kB	1.727,0 kB	[overzicht]
armhf	0.10.15-7+b1	582,9 kB	1.279,0 kB	[overzicht]
hppa (unofficial port)	0.10.14-2	977,9 kB	2.993,0 kB	[overzicht]
i386	0.10.15-7+b1	876,3 kB	2.607,0 kB	[overzicht]
ia64 (unofficial port)	0.10.15-7+b1	1.025,2 kB	4.829,0 kB	[overzicht]
m68k (unofficial port)	0.10.15-7+b1	775,3 kB	2.407,0 kB	[overzicht]
mips64el	0.10.15-7+b1	745,3 kB	3.062,0 kB	[overzicht]
ppc64 (unofficial port)	0.10.14-2	735,4 kB	2.620,0 kB	[overzicht]
ppc64el	0.10.15-7+b1	692,6 kB	2.304,0 kB	[overzicht]
riscv64	0.10.15-7+b1	663,5 kB	1.496,0 kB	[overzicht]
sh4 (unofficial port)	0.10.15-4	1.052,2 kB	2.782,0 kB	[overzicht]
sparc64 (unofficial port)	0.10.14-2	770,0 kB	2.627,0 kB	[overzicht]
x32 (unofficial port)	0.10.15-7+b1	817,2 kB	2.291,0 kB	[overzicht]