Pakket: progressivemauve (1.2.0+4713+dfsg-5 en anderen)

[ Bron: progressivemauve  ]

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Andere aan progressivemauve gerelateerde pakketten

• dep: libboost-filesystem1.74.0 (>= 1.74.0+ds1) [x32]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-filesystem1.83.0 (>= 1.83.0) [niet x32]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.74.0 (>= 1.74.0+ds1) [x32]

  Boost.Iostreams Library

• dep: libboost-iostreams1.83.0 (>= 1.83.0) [niet x32]

  Boost.Iostreams Library

• dep: libboost-program-options1.74.0 (>= 1.74.0+ds1) [x32]

  program options library for C++

• dep: libboost-program-options1.83.0 (>= 1.83.0) [niet x32]

  program options library for C++

• dep: libboost-system1.83.0 (>= 1.83.0) [sparc64]

  Operating system (e.g. diagnostics support) library

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, mips64el, ppc64, riscv64, sparc64, x32]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgenome0 (>= 1.3.11+svn20110227.4616)

  toolkit for developing bioinformatic related software

• dep: libmems1 (>= 1.6.0+4725) [alpha, ia64, ppc64, sparc64, x32]

  library to support DNA string matching and comparative genomics

• dep: libmems1t64 (>= 1.6.0+4725) [niet alpha, ia64, ppc64, sparc64, x32]

  library to support DNA string matching and comparative genomics

• dep: libmuscle1 (>= 3.7+4565) [sparc64]

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• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

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• enh: mauve-aligner

  multiple genome alignment

progressivemauve downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.2.0+4713+dfsg-5+b2	892,3 kB	6.441,0 kB	[overzicht]
amd64	1.2.0+4713+dfsg-5+b3	850,6 kB	5.393,0 kB	[overzicht]
arm64	1.2.0+4713+dfsg-5+b3	791,1 kB	5.774,0 kB	[overzicht]
armel	1.2.0+4713+dfsg-5+b3	671,7 kB	3.966,0 kB	[overzicht]
armhf	1.2.0+4713+dfsg-5+b3	668,8 kB	3.070,0 kB	[overzicht]
hppa (unofficial port)	1.2.0+4713+dfsg-5+b3	939,2 kB	5.325,0 kB	[overzicht]
i386	1.2.0+4713+dfsg-5+b3	842,1 kB	5.254,0 kB	[overzicht]
ia64 (unofficial port)	1.2.0+4713+dfsg-5+b2	1.091,3 kB	9.489,0 kB	[overzicht]
m68k (unofficial port)	1.2.0+4713+dfsg-5+b3	811,2 kB	5.262,0 kB	[overzicht]
mips64el	1.2.0+4713+dfsg-5+b3	823,7 kB	6.838,0 kB	[overzicht]
ppc64 (unofficial port)	1.2.0+4713+dfsg-5+b2	852,6 kB	7.313,0 kB	[overzicht]
ppc64el	1.2.0+4713+dfsg-5+b3	877,5 kB	6.863,0 kB	[overzicht]
riscv64	1.2.0+4713+dfsg-5+b3	939,3 kB	4.687,0 kB	[overzicht]
s390x	1.2.0+4713+dfsg-5+b3	729,4 kB	5.366,0 kB	[overzicht]
sh4 (unofficial port)	1.2.0+4713+dfsg-5+b3	920,5 kB	5.641,0 kB	[overzicht]
sparc64 (unofficial port)	1.2.0+4713+dfsg-5+b2	813,5 kB	27.865,0 kB	[overzicht]
x32 (unofficial port)	1.2.0+4713+dfsg-5+b2	887,1 kB	5.310,0 kB	[overzicht]