Pakket: plasmidid (1.6.5+dfsg-2)

[ Bron: plasmidid  ]

mapping-based, assembly-assisted plasmid identification tool

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

PlasmidID is a computational pipeline that maps Illumina reads over plasmid database sequences. The k-mer filtered, most covered sequences are clustered by identity to avoid redundancy and the longest are used as scaffold for plasmid reconstruction. Reads are assembled and annotated by automatic and specific annotation. All information generated from mapping, assembly, annotation and local alignment analyses is gathered and accurately represented in a circular image which allow user to determine plasmidic composition in any bacterial sample.

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plasmidid downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	46,1 kB	331,0 kB	[overzicht]
amd64	46,1 kB	331,0 kB	[overzicht]
arm64	46,1 kB	331,0 kB	[overzicht]
ppc64 (unofficial port)	46,1 kB	331,0 kB	[overzicht]