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[ Bron: minimap2  ]

Pakket: minimap2 (2.27+dfsg-1 en anderen)

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versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

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minimap2 downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
alpha (unofficial port) 2.26+dfsg-1 404,5 kB575,0 kB [overzicht]
amd64 2.27+dfsg-1 379,4 kB507,0 kB [overzicht]
arm64 2.27+dfsg-1 370,6 kB511,0 kB [overzicht]
armel 2.27+dfsg-1 388,8 kB550,0 kB [overzicht]
armhf 2.27+dfsg-1 389,8 kB482,0 kB [overzicht]
hppa (unofficial port) 2.24+dfsg-3+b2 409,8 kB575,0 kB [overzicht]
i386 2.27+dfsg-1 386,2 kB530,0 kB [overzicht]
ia64 (unofficial port) 2.24+dfsg-3+b1 441,2 kB755,0 kB [overzicht]
m68k (unofficial port) 2.24+dfsg-3+b1 385,5 kB558,0 kB [overzicht]
mips64el 2.27+dfsg-1 403,8 kB583,0 kB [overzicht]
ppc64 (unofficial port) 2.27+dfsg-1 409,7 kB639,0 kB [overzicht]
ppc64el 2.27+dfsg-1 390,6 kB575,0 kB [overzicht]
riscv64 2.27+dfsg-1 410,4 kB519,0 kB [overzicht]
s390x 2.27+dfsg-1 410,4 kB591,0 kB [overzicht]
sh4 (unofficial port) 2.24+dfsg-3+b2 424,6 kB574,0 kB [overzicht]
sparc64 (unofficial port) 2.27+dfsg-1 392,5 kB1.345,0 kB [overzicht]
x32 (unofficial port) 2.24+dfsg-2+b1 374,5 kB493,0 kB [overzicht]