Pakket: r-bioc-monocle (2.30.0-1 en anderen)

[ Bron: r-bioc-monocle  ]

clustering, differential expression, and trajectory analysis for RNA-Seq

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

Andere aan r-bioc-monocle gerelateerde pakketten

• dep: libc6 (>= 2.11) [armel, armhf, i386, m68k, mips64el, ppc64, s390x, sparc64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [hppa]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.11) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, hppa, ia64, m68k]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 11) [x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [niet x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [niet x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocviews

  Categorized views of R package repositories

• dep: r-bioc-hsmmsinglecell (>= 0.101.5)

  Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-cran-cluster

  GNU R package for cluster analysis by Rousseeuw et al

• dep: r-cran-combinat

  GNU R package with utilities for combinatorics

• dep: r-cran-ddrtree (>= 0.1.4)

  GNU R learning principal graphs with DDRTree

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-fastica

  GNU R package for ICA and Projection Pursuit

• dep: r-cran-ggplot2 (>= 1.0.0)

  implementation of the Grammar of Graphics

• dep: r-cran-igraph (>= 1.0.1)

  GNU R network analysis and visualization

• dep: r-cran-irlba (>= 2.0.0)

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• dep: r-cran-leidenbase (>= 0.1.9)

  GNU R and C/C++ Wrappers to Run the Leiden find_partition() Function

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix (>= 1.2-6)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• dep: r-cran-plyr

  tools for splitting, applying and combining data

• dep: r-cran-proxy

  GNU R distance and similarity measures

• dep: r-cran-qlcmatrix

  GNU R utility sparse matrix functions for quantitative language

• dep: r-cran-rann (>= 2.5)

  Fast Nearest Neighbour Search Using L2 Metric

• dep: r-cran-rcpp (>= 0.12.0)

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-slam

  GNU R sparse lighweight arrays and matrices package

• dep: r-cran-stringr

  Make it easier to work with strings

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-vgam (>= 1.0-6)

  GNU R package for estimating vector generalized additive models

• dep: r-cran-viridis

  GNU R package for color maps from matplotlib

• sug: r-bioc-scater

  Single-Cell Analysis Toolkit for Gene Expression Data in R

• sug: r-cran-hmisc

  GNU R miscellaneous functions by Frank Harrell

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-seurat [niet m68k, sh4]

  Tools for Single Cell Genomics

• sug: r-cran-testthat

  GNU R testsuite

r-bioc-monocle downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.30.0-1	1.391,7 kB	1.709,0 kB	[overzicht]
amd64	2.30.0-1	1.392,3 kB	1.657,0 kB	[overzicht]
arm64	2.30.0-1	1.389,5 kB	1.709,0 kB	[overzicht]
armel	2.30.0-1	1.388,8 kB	1.644,0 kB	[overzicht]
armhf	2.30.0-1	1.388,9 kB	1.632,0 kB	[overzicht]
hppa (unofficial port)	2.30.0-1	1.392,4 kB	1.662,0 kB	[overzicht]
i386	2.30.0-1	1.393,5 kB	1.655,0 kB	[overzicht]
ia64 (unofficial port)	2.30.0-1	1.396,8 kB	1.715,0 kB	[overzicht]
m68k (unofficial port)	2.30.0-1	1.380,3 kB	1.643,0 kB	[overzicht]
mips64el	2.30.0-1	1.389,7 kB	1.713,0 kB	[overzicht]
ppc64 (unofficial port)	2.30.0-1	1.393,0 kB	1.711,0 kB	[overzicht]
ppc64el	2.30.0-1	1.392,5 kB	1.709,0 kB	[overzicht]
riscv64	2.30.0-1+b1	1.391,8 kB	1.645,0 kB	[overzicht]
s390x	2.30.0-1	1.391,7 kB	1.660,0 kB	[overzicht]
sh4 (unofficial port)	2.30.0-1	1.396,1 kB	1.708,0 kB	[overzicht]
sparc64 (unofficial port)	2.30.0-1	1.388,5 kB	2.608,0 kB	[overzicht]
x32 (unofficial port)	2.26.0-2	1.389,6 kB	1.640,0 kB	[overzicht]