Pakket: r-bioc-dropletutils (1.22.0+ds-1 en anderen)

[ Bron: r-bioc-dropletutils  ]

BioConductor utilities for handling single-cell droplet data

Provides a number of utility functions for handling single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. This includes data loading from count matrices or molecule information files, identification of cells from empty droplets, removal of barcode-swapped pseudo-cells, and downsampling of the count matrix.

Andere aan r-bioc-dropletutils gerelateerde pakketten

• dep: libc6 (>= 2.27) [riscv64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.29) [niet alpha, ia64, riscv64, sh4]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libhdf5-103-1 [x32]

  HDF5 C runtime files - serial version

• dep: libhdf5-103-1t64 [niet x32]

  HDF5 C runtime files - serial version

• dep: libhdf5-cpp-103-1 (>= 1.10.5) [x32]

  HDF5 - C++ runtime files - serial version

• dep: libhdf5-cpp-103-1t64 (>= 1.10.5) [niet x32]

  HDF5 - C++ runtime files - serial version

• dep: libstdc++6 (>= 11) [x32]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [niet x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [niet x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1) [x32]

  GNU R core of statistical computation and graphics system

• dep: r-bioc-beachmat

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• dep: r-bioc-delayedmatrixstats

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-hdf5array

  HDF5 backend for DelayedArray objects

• dep: r-bioc-iranges

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• dep: r-bioc-rhdf5

  BioConductor HDF5 interface to R

• dep: r-bioc-rhdf5lib

  GNU R hdf5 library

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-bh

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• dep: r-cran-dqrng

  GNU R fast pseudo random number generators

• dep: r-cran-matrix

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• dep: r-cran-r.utils

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• dep: r-cran-rcpp

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• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-jsonlite

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• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

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• sug: r-cran-testthat

  GNU R testsuite

r-bioc-dropletutils downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.22.0+ds-1+b1	381,4 kB	827,0 kB	[overzicht]
amd64	1.22.0+ds-1+b1	388,1 kB	730,0 kB	[overzicht]
arm64	1.22.0+ds-1+b1	371,3 kB	762,0 kB	[overzicht]
armel	1.22.0+ds-1+b1	369,3 kB	689,0 kB	[overzicht]
armhf	1.22.0+ds-1+b1	371,6 kB	616,0 kB	[overzicht]
hppa (unofficial port)	1.22.0+ds-1+b1	384,2 kB	775,0 kB	[overzicht]
i386	1.22.0+ds-1+b1	392,3 kB	744,0 kB	[overzicht]
ia64 (unofficial port)	1.22.0+ds-1+b1	404,7 kB	1.078,0 kB	[overzicht]
mips64el	1.22.0+ds-1+b1	368,5 kB	850,0 kB	[overzicht]
ppc64 (unofficial port)	1.22.0+ds-1+b1	388,5 kB	894,0 kB	[overzicht]
ppc64el	1.22.0+ds-1+b1	387,5 kB	826,0 kB	[overzicht]
riscv64	1.22.0+ds-1+b1	387,1 kB	673,0 kB	[overzicht]
s390x	1.22.0+ds-1+b1	388,4 kB	762,0 kB	[overzicht]
sh4 (unofficial port)	1.22.0+ds-1+b1	400,3 kB	760,0 kB	[overzicht]
sparc64 (unofficial port)	1.22.0+ds-1+b1	364,2 kB	1.409,0 kB	[overzicht]
x32 (unofficial port)	1.18.1+ds-1	380,4 kB	693,0 kB	[overzicht]