Pakket: python3-pairtools (1.0.3-1 en anderen)

[ Bron: pairtools  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Andere aan python3-pairtools gerelateerde pakketten

• dep: cython3 [hppa, ia64, ppc64, sparc64, x32]

  C-Extensions for Python 3

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3.4) [hppa]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el, ppc64, sparc64]

• dep: libc6.1 (>= 2.33) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: libgcc-s1 (>= 3.0) [alpha, amd64, arm64, i386, mips64el, ppc64el, riscv64, sh4]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libstdc++6 (>= 11) [niet hppa, ia64, ppc64, sparc64, x32]

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.11) [ia64, x32]

  dep: python3 (<< 3.12) [hppa, ppc64, sparc64]

  dep: python3 (<< 3.13) [niet hppa, ia64, ppc64, sparc64, x32]

  dep: python3 (>= 3.10~) [hppa, ia64, ppc64, sparc64, x32]

  dep: python3 (>= 3.11~) [niet hppa, ia64, ppc64, sparc64, x32]

• dep: python3-bioframe [niet hppa, ia64, ppc64, sparc64, x32]

  library to enable flexible, scalable operations on genomic interval dataframes

• dep: python3-click

  Wrapper around optparse for command line utilities - Python 3.x

• dep: python3-nose [hppa, ia64, ppc64, sparc64, x32]

  test discovery and running for Python3 unittest

• dep: python3-numpy (>= 1:1.20.0) [hppa, ia64, ppc64, sparc64, x32]

  Fast array facility to the Python language (Python 3)

  dep: python3-numpy (>= 1:1.22.0) [niet hppa, ia64, ppc64, sh4, sparc64, x32]

  dep: python3-numpy (>= 1:1.25.0) [sh4]

• dep: python3-numpy-abi9

  virtueel pakket geboden door python3-numpy

• dep: python3-pandas [niet hppa, ia64, ppc64, sparc64, x32]

  data structures for "relational" or "labeled" data

• dep: python3-pysam (>= 0.20.0+ds-3~) [niet hppa, ia64, ppc64, sparc64, x32]

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy [niet hppa, ia64, ppc64, sparc64, x32]

  scientific tools for Python 3

• dep: python3-yaml [niet hppa, ia64, ppc64, sparc64, x32]

  YAML parser and emitter for Python3

• sug: python3-pairtools-examples (>= 1.0.2)

  Process sequencing data from a Hi-C experiment (examples)

python3-pairtools downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.0.3-1	207,9 kB	1.177,0 kB	[overzicht]
amd64	1.0.3-1	226,4 kB	1.021,0 kB	[overzicht]
arm64	1.0.3-1	202,3 kB	1.043,0 kB	[overzicht]
armel	1.0.3-1	199,0 kB	903,0 kB	[overzicht]
armhf	1.0.3-1	203,9 kB	763,0 kB	[overzicht]
hppa (unofficial port)	0.3.0-3.2+b2	144,6 kB	640,0 kB	[overzicht]
i386	1.0.3-1	226,5 kB	1.007,0 kB	[overzicht]
ia64 (unofficial port)	0.3.0-3.2+b1	137,3 kB	612,0 kB	[overzicht]
m68k (unofficial port)	1.0.3-1	202,5 kB	923,0 kB	[overzicht]
mips64el	1.0.3-1	194,3 kB	1.191,0 kB	[overzicht]
ppc64 (unofficial port)	0.3.0-3.2+b2	146,6 kB	752,0 kB	[overzicht]
ppc64el	1.0.3-1	217,0 kB	1.171,0 kB	[overzicht]
riscv64	1.0.3-1	221,6 kB	871,0 kB	[overzicht]
sh4 (unofficial port)	1.0.3-1+b1	309,0 kB	1.152,0 kB	[overzicht]
sparc64 (unofficial port)	0.3.0-3.2+b2	125,9 kB	2.292,0 kB	[overzicht]
x32 (unofficial port)	0.3.0-3.2+b1	121,6 kB	405,0 kB	[overzicht]