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Pakket: python3-pairtools-examples (1.1.3-2 en anderen)

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Process sequencing data from a Hi-C experiment (examples)

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations: 

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

This package contains some examples

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Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
alpha (unofficial port) 1.1.3-2 943,0 kB997,0 kB [overzicht]
amd64 1.1.3-2+b1 943,3 kB998,0 kB [overzicht]
arm64 1.1.3-2+b1 943,3 kB998,0 kB [overzicht]
hppa (unofficial port) 0.3.0-3.2+b2 12,1 kB50,0 kB [overzicht]
ia64 (unofficial port) 0.3.0-3.2+b1 12,1 kB50,0 kB [overzicht]
loong64 (unofficial port) 1.1.3-2+b1 943,2 kB998,0 kB [overzicht]
m68k (unofficial port) 1.1.2-1 942,4 kB997,0 kB [overzicht]
ppc64 (unofficial port) 0.3.0-3.2+b2 12,1 kB50,0 kB [overzicht]
ppc64el 1.1.3-2+b1 943,2 kB998,0 kB [overzicht]
riscv64 1.1.3-2+b1 943,3 kB998,0 kB [overzicht]
sh4 (unofficial port) 1.1.2-1 942,4 kB997,0 kB [overzicht]
sparc64 (unofficial port) 0.3.0-3.2+b2 12,1 kB50,0 kB [overzicht]
x32 (unofficial port) 0.3.0-3.2+b1 12,1 kB50,0 kB [overzicht]