Pakket: python3-dna-jellyfish (2.3.1-5 en anderen)

[ Bron: jellyfish  ]

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Andere aan python3-dna-jellyfish gerelateerde pakketten

• dep: libc6 (>= 2.34) [hppa]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.38) [niet hppa, ia64, loong64]

  dep: libc6 (>= 2.41) [loong64]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

• dep: libgcc-s1 (>= 3.0) [niet hppa, ia64, riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libjellyfish-2.0-2 (>= 2.3.0) [ia64]

  count k-mers in DNA sequences (dynamic library of jellyfish)

  dep: libjellyfish-2.0-2 (>= 2.3.1) [niet ia64]

• dep: libstdc++6 (>= 13.1) [niet ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10) [ia64]

  dep: python3 (<< 3.13) [hppa]

  dep: python3 (<< 3.15) [niet hppa, ia64]

  dep: python3 (>= 3.11~) [hppa]

  dep: python3 (>= 3.13~) [niet hppa, ia64]

  dep: python3 (>= 3.9~) [ia64]

python3-dna-jellyfish downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.3.1-5+b1	65,6 kB	334,0 kB	[overzicht]
arm64	2.3.1-5+b1	64,2 kB	438,0 kB	[overzicht]
hppa (unofficial port)	2.3.1-2+b1	74,2 kB	384,0 kB	[overzicht]
ia64 (unofficial port)	2.3.0-12	67,0 kB	280,0 kB	[overzicht]
loong64 (unofficial port)	2.3.1-5+b1	63,7 kB	438,0 kB	[overzicht]
ppc64el	2.3.1-5+b1	68,2 kB	438,0 kB	[overzicht]
riscv64	2.3.1-5+b1	69,4 kB	302,0 kB	[overzicht]